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In all cases, the community algorithm can be easily parallelized up to the machine level.

Possible next steps
——————–

We currently plan to extend the model-based variant as described in Section \[section:model-based\] with the following possibly useful variants of the alignment model:

– Fast static thresholding [@Rekers2007]

– Fast exact model-based alignment [@Mueller2013]

– Greedy balanced partitioning

We plan to do this for the model-free variant, too, starting with the version described in Section \[section:model-free\].

Conclusion
==========

We presented in this paper a new variant of the dynamic programming algorithm for multiple-sequence alignment, which we call the *community* algorithm. It is a hybrid approach, motivated by the model-free variant of the alignment model, but guided by the following principles: (1) the calculation of three scores is better than two, (2) a sparse, flat score vector is better than a dense, non-sparse score vector and (3) using the

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