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Full Text Available The discovery of new oxygenic photosynthesis and oxygenic phototrophs has led to the recognition that the anoxygenic phototrophs and their bacterial relatives have played a major role in the early evolution of the earth’s ecosystems. This contribution examines the phylogeny and evolution of anoxygenic phototrophs. It discusses their role in earth’s oceans and lakes in anoxic or oxic environments. It reviews their environmental distribution and speciation based on ecology and taxonomy. The phylogenetic relationships and evolution of two main groups of anoxygenic phototrophs and their relatives are discussed. This includes the nitrospirae, the purple phototrophic bacteria, the cyanobacteria and the cyanelles. The anoxygenic phototrophs are examined with a focus on their physiological characteristics, evolution and ecological interactions. Cyanobacteria are primary producers in the ocean. They have grazed on ancient reefs and their populations have dominated some modern reefs, building extensive biofilms in places where corals would not form. Cyanobacteria have also been found at sea-floor methane seeps. The authors show that, although previous research often failed to detect them, some cyanobacteria from previous studies were in fact heterocysts. They also find new cyanobacteria at methane seeps. Laser fluorometry using a 480-nm laser in combination with a spectrophotometer was developed for use as a direct-current (DC) fluorometer. The method employs a quantum cascade laser (QCL) as an excitation source and a sapphire-crystal spectrograph for detection. The present method is a combination of a conventional DC fluorometer and a QCL source. A QCL emits light continuously and offers an advantage over a pulsed laser source in terms of speed. Using a DC fluorometer to detect light-intensity fluctuations due to diatomic molecule dissociation produces a quenching signal, providing a more accurate detection of fluorophores than simple intensity measurements. In addition, the QCL offers a strong absorption band in the region of the 441-nm absorption peak of oxidized species of pyrite, whereas a conventional diode laser does not. Therefore, a sapphire crystal-based spectrograph was employed. A calibration set was prepared by mixing a mixture of reduced and oxidized pyrite. The correlation coefficient was 0.986, with an average detection limit of 2.2 x 10-8 mol l-1 and an RSD of less than 3%. The present method is particularly useful for detection of metal-containing species with a strong absorption in the infrared region. Laser fluorometry using a 480-nm laser in combination with a spectrophotometer was developed for use as a direct-current (DC) fluorometer. The method employs a quantum cascade laser (QCL) as an excitation source and a sapphire-crystal spectrograph for detection. The present method is a combination of a conventional DC fluorometer and a QCL source. A QCL emits light continuously and offers an advantage over a pulsed laser source in terms of speed. Using a DC fluorometer to detect light-intensity fluctuations due to diatomic molecule dissociation produces a quenching signal, providing a more accurate detection of fluorophores than simple intensity measurements. In addition, the QCL offers a strong absorption band in the region of the 441-nm absorption peak of oxidized species of pyrite, whereas a conventional diode laser does not. Therefore, a sapphire crystal-based spectrograph was employed. A calibration set was prepared by mixing a mixture of reduced and oxidized pyrite. The correlation coefficient was 0.
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